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Abstract Ingestion of microplastics (MP) by suspension‐feeding bivalves has been well‐documented. However, it is unclear whether exposure to MP could damage the stomach and digestive gland (gut) of these animals, causing ramifications for organism and ecosystem health. Here, we show no apparent effects of nylon microfiber (MF) ingestion on the gut microbiome or digestive tissues of the blue mussel,Mytilus edulis. We exposed mussels to two low concentrations (50 and 100 particles/L) of either nylon MF orSpartinaspp. particles (dried, ground marsh grass), ca. 250–500 μm in length, or a no particle control laboratory treatment for 21 days. Results showed that nylon MF, when aged in coarsely filtered seawater, developed a different microbial community thanSpartinaspp. particles and seawater, however, even after exposure to this different community, mussel gut microbial communities resisted disturbance from nylon MF. The microbial communities of experimental mussels clustered together in ordination and were similar in taxonomic composition and measures of alpha diversity. Additionally, there was no evidence of damage to gut tissues after ingestion of nylon MF orSpartinaspp. Post‐ingestive particle processing likely mediated a short gut retention time of these relatively large particles, contributing to the negligible treatment effects.